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<channel>
	<title>Quantum Forest &#187; forestry</title>
	<atom:link href="http://quantum.uncronopio.org/category/forestry/feed/" rel="self" type="application/rss+xml" />
	<link>http://quantum.uncronopio.org</link>
	<description>logs written by Luis Apiolaza in Christchurch, New Zealand</description>
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		<title>Godspeed Norman</title>
		<link>http://quantum.uncronopio.org/2009/09/14/godspeed-norman/</link>
		<comments>http://quantum.uncronopio.org/2009/09/14/godspeed-norman/#comments</comments>
		<pubDate>Sun, 13 Sep 2009 20:04:48 +0000</pubDate>
		<dc:creator>Luis</dc:creator>
				<category><![CDATA[environment]]></category>
		<category><![CDATA[forestry]]></category>
		<category><![CDATA[miscellanea]]></category>

		<guid isPermaLink="false">http://quantum.uncronopio.org/?p=388</guid>
		<description><![CDATA[Norman Borlaug&#8211;the &#8216;father of the Green Revolution&#8217;&#8211;just died§. I raise my glass for a breeder who did make a difference.
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			<content:encoded><![CDATA[<p>Norman Borlaug&#8211;the &#8216;father of the Green Revolution&#8217;&#8211;just died<sup><a href="http://www.nytimes.com/2009/09/14/business/energy-environment/14borlaug.html?_r=2&#038;hp">§</a></sup>. I raise my glass for a breeder who did make a difference.</p>
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		<title>The value of professional associations</title>
		<link>http://quantum.uncronopio.org/2009/05/29/the-value-of-professional-associations/</link>
		<comments>http://quantum.uncronopio.org/2009/05/29/the-value-of-professional-associations/#comments</comments>
		<pubDate>Fri, 29 May 2009 01:31:52 +0000</pubDate>
		<dc:creator>Luis</dc:creator>
				<category><![CDATA[forestry]]></category>
		<category><![CDATA[new zealand]]></category>

		<guid isPermaLink="false">http://quantum.uncronopio.org/?p=371</guid>
		<description><![CDATA[I have followed with interest the discussion on what should be the role of the New Zealand Institute of Forestry (NZIF§). It seems that a frequent position espoused by members is that the NZIF has two options to provide value to its members: making registration a legal requirement and ensuring high professional standards. I would [...]]]></description>
			<content:encoded><![CDATA[<p>I have followed with interest the discussion on what should be the role of the New Zealand Institute of Forestry (NZIF<sup><a href="http://www.nzif.org.nz">§</a></sup>). It seems that a frequent position espoused by members is that the NZIF has two options to provide value to its members: making registration a legal requirement and ensuring high professional standards. I would contend that the first one is an oxymoron: &#8216;let us create value by making membership compulsory, so then members derive value from membership&#8217;. This generates as much value to members as a protection racket does to its victims. The second approach relies on the existence of an authority with the capacity to evaluate high professional standards. But Who are our peers in our narrow fields of specialization? Who can judge us as being &#8216;good enough&#8217; to sell services as a growth modeler, forest economist, tree breeder, etc? At the end of the day, the market is king (or queen), and we are judged every time that we complete a professional assignment. The same goes for other activities: I would hire an accountant or a lawyer based on recommendations and experience—which are often translated in the market place through availability and fees charged—rather than by membership of a professional association.</p>
<p>That leaves us with how do we really derive value from voluntary association? We interact with other members, we exchange information, we learn. Do we strictly need the NZIF for this learning? Probably not, although it facilitates the process. Maybe the right function for the NZIF is to create opportunities for professional development, conferences, coordinated submissions, and making clear the role of forestry to New Zealand society. I think that the NZIF provides value by making communication easier for its members while any artificial barriers will only be detrimental to the interest of people working in the forestry sector and to their customers.</p>
<p>P.S. This quote from Free to Choose<sup><a href="http://www.amazon.com/gp/product/0156334607?ie=UTF8&#038;tag=luisapiolaswe-20&#038;linkCode=as2&#038;camp=1789&#038;creative=390957&#038;creativeASIN=0156334607">§</a></sup> by Milton and Rose Friedman makes the point very clearly:</p>
<blockquote><p>Licensure is widely used to restrict entry, particularly for occupations like medicine that have many individual practitioners dealing with a large number of individual customers. As in medicine, the boards that administer the licensure provisions are composed primarily of members of the occupation licensed—whether they be dentists, lawyers, cosmetologists, airline pilots, plumbers, or morticians. There is no occupation so remote that an attempt has not been made to restrict its practice by licensure. According to the chairman of the federal Trade Commission: “At a recent session of one state legislature, occupational groups advanced bills to license themselves as auctioneers, well-diggers, home improvement contractors, pet groomers, electrologists, sex therapists, data processors, appraisers, and TV repairers. Hawaii licenses tattoo artists. New Hampshire licenses lightning-rod salesman.” </p>
<p>The <em>justification</em> offered is always the same: to protect the consumer. However, the <em>reason</em> is demonstrated by observing who lobbies at the state legislature for the imposition or strengthening of licensure. The lobbyists are invariably representatives of the occupation in question rather than of the customers. True enough, plumbers presumably know better than anyone else what their customers need to be protected against. However, it is hard to regard altruistic concern for their customers as the primary motive behind their determined efforts to get legal power to decide who may be a plumber.</p></blockquote>
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		<title>Drylands</title>
		<link>http://quantum.uncronopio.org/2009/04/05/drylands/</link>
		<comments>http://quantum.uncronopio.org/2009/04/05/drylands/#comments</comments>
		<pubDate>Sat, 04 Apr 2009 20:07:07 +0000</pubDate>
		<dc:creator>Luis</dc:creator>
				<category><![CDATA[forestry]]></category>
		<category><![CDATA[photos]]></category>

		<guid isPermaLink="false">http://quantum.uncronopio.org/?p=369</guid>
		<description><![CDATA[There is a substantial amount of land with low rainfall&#8211;say between 500 and 900 mm of rain per year. Usually, this land is allocated to low productivity uses, for example sheep farming. Could we use durable wood, drought tolerant eucalypts? We could then have diversification of land use, alternative products and even additional carbon sequestration.
When [...]]]></description>
			<content:encoded><![CDATA[<p>There is a substantial amount of land with low rainfall&#8211;say between 500 and 900 mm of rain per year. Usually, this land is allocated to low productivity uses, for example sheep farming. Could we use durable wood, drought tolerant eucalypts? We could then have diversification of land use, alternative products and even additional carbon sequestration.</p>
<p>When we say dry it looks like this:</p>
<p><a href="http://www.flickr.com/photos/58862990@N00/3406274220" title="View 'Dry in Marlborough' on Flickr.com"><img src="http://farm4.static.flickr.com/3555/3406274220_d4b9601a3e.jpg" alt="Dry in Marlborough" border="0" width="500" height="375" /></a></p>
<p><strong>Drylands in Marlborough.</strong></p>
<p>I would say that it is certainly worth a try; more precisely, a proper try. There is a history of half-hearted attempts in the matter, so if we are going to have a go, better we do it well or not at all.</p>
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		<title>Wood variability</title>
		<link>http://quantum.uncronopio.org/2008/08/29/wood-variability/</link>
		<comments>http://quantum.uncronopio.org/2008/08/29/wood-variability/#comments</comments>
		<pubDate>Thu, 28 Aug 2008 22:20:18 +0000</pubDate>
		<dc:creator>Luis</dc:creator>
				<category><![CDATA[forestry]]></category>
		<category><![CDATA[geocoded]]></category>
		<category><![CDATA[photos]]></category>
		<category><![CDATA[research]]></category>

		<guid isPermaLink="false">http://quantum.uncronopio.org/?p=331</guid>
		<description><![CDATA[Trees are amongst the most variable living organisms in the planet. How variable is wood colour for a given species?

Eucalyptus urophylla x Eucalyptus grandis hybrid&#8217;s sawn timber. Notice the range of available colours. Maybe the use of clones is exacerbating colour differences. Photo taken in Bahia State, Brazil.
Rough location for the picture
Rough location for the [...]]]></description>
			<content:encoded><![CDATA[<p>Trees are amongst the most variable living organisms in the planet. How variable is wood colour for a given species?</p>
<p><a href="http://www.flickr.com/photos/58862990@N00/2806364555" title="View 'Colour variation' on Flickr.com"><img src="http://farm4.static.flickr.com/3264/2806364555_e6c054b7ff.jpg" alt="Colour variation" border="0" width="500" height="375" /></a><br />
<strong><em>Eucalyptus urophylla x Eucalyptus grandis</em> hybrid&#8217;s sawn timber. Notice the range of available colours. Maybe the use of clones is exacerbating colour differences. Photo taken in Bahia State, Brazil.</strong></p>
<p><a href="http://maps.google.com.br/maps?f=q&#038;hl=pt-BR&#038;geocode=&#038;q=posto+da+mata+Nova+Vi%C3%A7osa&#038;ie=UTF8&#038;ll=-17.887273,-39.646912&#038;spn=1.589157,2.749329&#038;z=9">Rough location for the picture</a></p>
<p><strong>Rough location for the picture.</strong></p>
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		<title>George Orwell and wood durability</title>
		<link>http://quantum.uncronopio.org/2008/08/18/george-orwell-and-wood-durability/</link>
		<comments>http://quantum.uncronopio.org/2008/08/18/george-orwell-and-wood-durability/#comments</comments>
		<pubDate>Mon, 18 Aug 2008 00:49:49 +0000</pubDate>
		<dc:creator>Luis</dc:creator>
				<category><![CDATA[forestry]]></category>
		<category><![CDATA[miscellanea]]></category>
		<category><![CDATA[research]]></category>
		<category><![CDATA[writing]]></category>

		<guid isPermaLink="false">http://quantum.uncronopio.org/?p=329</guid>
		<description><![CDATA[The Orwell Price is publishing George Orwell&#8217;s diaries &#8216;in real time&#8217;, just 70 years apart. The entry of 17th August has a reference to a newspaper clipping on Greenheart Wood:
Greenheart wood, probably the most durable timber in the world, is a member of the laurel family, and grows high on the slopes of the British [...]]]></description>
			<content:encoded><![CDATA[<p>The Orwell Price is publishing <a href="http://orwelldiaries.wordpress.com/">George Orwell&#8217;s diaries</a> &#8216;in real time&#8217;, just 70 years apart. The entry of <a href="http://orwelldiaries.wordpress.com/2008/08/17/august-17/">17<sup>th</sup> August</a> has a reference to a newspaper clipping on Greenheart Wood:</p>
<blockquote><p><font style='font-variant: small-caps'>Greenheart</font> wood, probably the most durable timber in the world, is a member of the laurel family, and grows high on the slopes of the British Guiana Highlands. It is dark green in colour, is so heavy as to sink in water, and takes a high polish.</p>
<p>Its great elasticity makes it suitable for the construction of fishing-rods and the butt ends of billiard cues, yet it is listed A1 at Lloyd’s for shipbuilding, and serves us besides, as piles for piers, jetties, dock entrances and lock gates.</p>
<p>It withstands the attack of submarine borers such as the teredo worm, and is much less vulnerable than most timbers, even tropical hard-woods, to the land attack of the white ant.</p>
<p>Greenheart was largely used in making the Panama Canal. Piles made of the wood have, elsewhere, been taken up and found to be in excellent preservation after 80 years under water.</p>
<p>In a Glasgow museum are two pieces of planking from a wreck submerged on the west coast of Scotland for over 18 years: one, of teak, is almost entirely eaten away: the other, greenheart, is slightly pitted on the surface.</p>
<p>A log of greenheart measuring 45 feet by two feet by two feet weighs six tons. A.B.</p></blockquote>
<p>Nice to see a connection like this, just when we are working in breeding for natural durability.</p>
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		<title>Harvesting operations</title>
		<link>http://quantum.uncronopio.org/2008/04/07/harvesting-operations/</link>
		<comments>http://quantum.uncronopio.org/2008/04/07/harvesting-operations/#comments</comments>
		<pubDate>Mon, 07 Apr 2008 02:23:25 +0000</pubDate>
		<dc:creator>Luis</dc:creator>
				<category><![CDATA[forestry]]></category>
		<category><![CDATA[travel]]></category>

		<guid isPermaLink="false">http://quantum.uncronopio.org/2008/04/07/harvesting-operations/</guid>
		<description><![CDATA[Mechanised forestry operations at Rigesa near Canoinhas, Santa Catarina, Brazil. The trees are 45-50 m tall at age 17 years. The use of a feller buncher (in the picture) has reduced log breakages from 50% to less than 5%.

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			<content:encoded><![CDATA[<p>Mechanised forestry operations at Rigesa near Canoinhas, Santa Catarina, Brazil. The trees are 45-50 m tall at age 17 years. The use of a feller buncher (in the picture) has reduced log breakages from 50% to less than 5%.</p>
<p><a href="http://www.flickr.com/photos/58862990@N00/2393982507" title="View 'feller buncher' on Flickr.com"><img src="http://farm4.static.flickr.com/3105/2393982507_3d8b166f38.jpg" alt="feller buncher" border="0" width="375" height="500" /></a></p>
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		<title>The end of Forestry in Tasmania</title>
		<link>http://quantum.uncronopio.org/2005/11/01/the-end-of-forestry-in-tasmania/</link>
		<comments>http://quantum.uncronopio.org/2005/11/01/the-end-of-forestry-in-tasmania/#comments</comments>
		<pubDate>Tue, 01 Nov 2005 02:29:38 +0000</pubDate>
		<dc:creator>Luis</dc:creator>
				<category><![CDATA[environment]]></category>
		<category><![CDATA[forestry]]></category>
		<category><![CDATA[tasmania]]></category>
		<category><![CDATA[web]]></category>

		<guid isPermaLink="false">http://quantum.uncronopio.org/2005/11/01/the-end-of-forestry-in-tasmania/</guid>
		<description><![CDATA[I got you! This post is not about the end of forestry activity in Tasmania, but about the end of the Forestry in Tasmania web pages. After two years compiling materials and hand formatting HTML I have decided to stop updating the sub domain. The fact that I am leaving Tasmania at the end of [...]]]></description>
			<content:encoded><![CDATA[<p>I got you! This post is not about the end of forestry activity in Tasmania, but about the end of the <a href="http://forestry.uncronopio.org">Forestry in Tasmania</a> web pages. After two years compiling materials and hand formatting HTML I have decided to stop updating the sub domain. The fact that <a href="http://quantum.uncronopio.org/2005/10/06/going-going-gone/">I am leaving Tasmania</a> at the end of the year&#8212;so I will not have time to keep up to date with what is going on&#8212;is just the straw that broke&#8230; you know.</p>
<p>I still need to decide what to do with the site; either I will leave it unchanged for posterity&#8217;s sake or pull the plug and delete the whole thing. Over these last two years I have received a fair amount of abuse and a few examples of praise for keeping the site and trying to present a &#8216;fair view&#8217; of environmental discussion in Tasmania. However, whatever tries to pass as debate is so low quality that it is easy to get disheartened with what one reads in the media.</p>
<p>Will I start a &#8216;forestry in New Zealand&#8217; page? I doubt it; my role will be completely different and forestry activity over there is much less contentious. I rather spend some time learning Maori&#8212;I am quite keen about this&#8212;and practicing <a href="http://www.newzealand.com/travel/about-nz/culture/haka-feature/haka.cfm">the haka</a> with Orlando.</p>
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		<title>Woodchips under threat</title>
		<link>http://quantum.uncronopio.org/2005/08/09/woodchips-under-threat/</link>
		<comments>http://quantum.uncronopio.org/2005/08/09/woodchips-under-threat/#comments</comments>
		<pubDate>Tue, 09 Aug 2005 07:40:00 +0000</pubDate>
		<dc:creator>Luis</dc:creator>
				<category><![CDATA[environment]]></category>
		<category><![CDATA[forestry]]></category>
		<category><![CDATA[tasmania]]></category>

		<guid isPermaLink="false">http://quantum.uncronopio.org/2005/08/09/woodchips-under-threat/</guid>
		<description><![CDATA[The Tasmanian forest industry has lost contracts to supply 400,000 tonnes of woodchips to Japanese paper companies. This will certainly have an effect on industry and Forestry Tasmania already announced that it will be offering voluntary redundancies. They will most likely be targeted at non-essential jobs (trimming the fat of the organisation) so those positions [...]]]></description>
			<content:encoded><![CDATA[<p>The Tasmanian forest industry has <a href="http://abc.net.au/news/australia/tas/northtas/200508/s1429116.htm" title="link to ABC">lost contracts</a> to supply 400,000 tonnes of woodchips to Japanese paper companies. This will certainly have an effect on industry and <a href="http://www.forestrytas.com.au">Forestry Tasmania</a> already announced that it will be <a href="http://www.abc.net.au/news/newsitems/200508/s1431427.htm" title="link to ABC">offering voluntary redundancies</a>. They will most likely be targeted at non-essential jobs (trimming the fat of the organisation) so those positions will not be filled again. It would not make any sense otherwise.</p>
<p>While the forest industry <a href="http://www.abc.net.au/news/newsitems/200508/s1431649.htm" title="link to ABC">was quick to blame</a> <a href="http://www.tas.greens.org.au">Greens</a> and other <a href="http://www.wilderness.org.au" title="link to Wilderness Society">conservationists</a>, they also have a good proportion of blame. It is true that conservationists have been tackling the customers of Japanese paper companies, in many cases with misleading information. This pushed companies like <a href="http://www.np-g.com/e/index.html">Nippon Paper</a> to start <a href="http://www.np-g.com/e/csr/ideology/materials_form.html" title="link to Nippon Paper consultation form">public consultation</a> on the issue. However, it is the Tasmanian industry&#8217;s fault to have mostly ignored this situation and clearly of being out of touch with their customers. This campaign did not happen overnight, but it has been going on for years.</p>
<p>There are also indications that the cost of woodchips from Tassie is becoming <a href="http://www.themercury.news.com.au/common/story_page/0,5936,16198780%255E921,00.html" title="link to The Mercury">not very competitive</a>. There may be some elements of hard negotiations too, with Japanese customers playing the environmental card mostly for obtaining lower prices.</p>
<p>Whatever the full reasons, it is clear that we have some very interesting times ahead.</p>
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		<title>LIDAR ground truthing</title>
		<link>http://quantum.uncronopio.org/2005/08/01/lidar-ground-truthing/</link>
		<comments>http://quantum.uncronopio.org/2005/08/01/lidar-ground-truthing/#comments</comments>
		<pubDate>Mon, 01 Aug 2005 07:24:41 +0000</pubDate>
		<dc:creator>Luis</dc:creator>
				<category><![CDATA[forestry]]></category>
		<category><![CDATA[statistics]]></category>

		<guid isPermaLink="false">http://quantum.uncronopio.org/2005/08/01/lidar-ground-truthing/</guid>
		<description><![CDATA[In the previous post I was hopeful that our simple LIDAR data processing would be able to locate the trees, but I did not have any evidence to confirm that what we saw in the computer was not a fluke.
After postponing field work due to bad weather, last Thursday we had a field crew assessing [...]]]></description>
			<content:encoded><![CDATA[<p>In the <a href="http://quantum.uncronopio.org/2005/07/21/first-look-at-lidar/">previous post</a> I was hopeful that our simple LIDAR data processing would be able to locate the trees, but I did not have any evidence to confirm that what we saw in the computer was not a fluke.</p>
<p>After postponing field work due to bad weather, last Thursday we had a field crew assessing six GPS located plots. Today David overlayed the plot data, after differentially correcting it, and the position of the trees estimated with LIDAR and ta-da! the trees pretty much match. There are some random differences (of up to 2 meters) in position, but considering that the stem is not necessarily under the top of the tree and that there was quite a bit of data processing and smoothing, the results seem to be extremely promising.</p>
<p>We now need to formally estimate the association between positions, explain any errors of detection (trees in the ground but missing in LIDAR or vice versa) and prepare a short report.</p>
<p>Some times work is sweet, particularly when reality and models match one another.</p>
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		<title>First look at LIDAR</title>
		<link>http://quantum.uncronopio.org/2005/07/21/first-look-at-lidar/</link>
		<comments>http://quantum.uncronopio.org/2005/07/21/first-look-at-lidar/#comments</comments>
		<pubDate>Thu, 21 Jul 2005 07:12:57 +0000</pubDate>
		<dc:creator>Luis</dc:creator>
				<category><![CDATA[forestry]]></category>
		<category><![CDATA[software]]></category>
		<category><![CDATA[statistics]]></category>

		<guid isPermaLink="false">http://quantum.uncronopio.org/2005/07/21/first-look-at-lidar/</guid>
		<description><![CDATA[This has been a very busy and intense week. Deviations from routine are &#8212; at least most of the time &#8212; welcome, and particularly so in this case. 
LIDAR is a fascinating technology, which until last week I always thought to be very overrated. People were always presenting pretty pictures, but nothing really useful. Last [...]]]></description>
			<content:encoded><![CDATA[<p>This has been a very busy and intense week. Deviations from routine are &#8212; at least most of the time &#8212; welcome, and particularly so in this case. </p>
<p><acronym title="LIght Detection And Raging">LIDAR</acronym> is a fascinating technology, which until last week I always thought to be very overrated. People were always presenting pretty pictures, but nothing really useful. Last Friday we had a meeting where we discussed using <a href="http://www.ghcc.msfc.nasa.gov/sparcle/sparcle_tutorial.html" title="link to NASA">LIDAR</a>, aerophotography, <a href="http://www.digitalglobe.com/">Quickbird</a> and field measurements in some native forest to obtain stand level attributes and make thinning decisions. Finally a practical application!</p>
<p>On Monday David, Jamie and I got the text files (with x, y and z coordinates, and intensity). The files were huge, with a total of 150,000 points to describe 10 ha. I first read them with <a href="http://insightful.com">Splus</a> and <a href="http://www.r-project.org">R</a>, which clearly didn&#8217;t like much the size of the matrices. Maybe Splus 7 developer (with the new pipeline architecture) works better, but I do not have a copy yet.</p>
<p>At the same time, I imported the data into <a href="http://mayavi.sourceforge.net/">MayaVi</a> (which uses VTK) using an adaptation of <a href="http://public.kitware.com/pipermail/vtkusers/2003-December/070658.html">this Python script</a> and producing the following visualisation to get a feeling of the site. It is easy to interact with the picture, and one can see the road and the difference between old trees and regeneration. However, it is still pretty useless.</p>
<p><img src='http://quantum.uncronopio.org/wp-content/uploads/2008/01/lidardatainmayavi.jpg' alt='LIDAR data in MayaVi' /></p>
<p>Trying to work with individual (non-grid) points proved to be fruitless. The size of the problem is huge, and trying to use any spatial statistics contained in the R module <a href="http://sal.uiuc.edu/csiss/Rgeo/">spatstat</a> was hopeless. Trying to apply anything that requires a large distance matrix (150,000&#215;150,000) is guaranteed failure.</p>
<p>Meanwhile, Jamie helped David to obtain crown and terrain surfaces using Kriging in <a href="http://www.saga-gis.uni-goettingen.de/html/index.php">SAGA</a>. </p>
<p><img src='http://quantum.uncronopio.org/wp-content/uploads/2008/01/lidarheightsurface.jpg' alt='LIDAR height surface' /></p>
<p>After transforming them in grids, and substracting them to get &#8216;true&#8217; tree heights, David and I came up with a naive (slow but apparently effective) way of finding the top of the trees. After a few problems with the implementation and Simon&#8217;s help using a SQL query in <a href="http://www.manifold.net/">Manifold</a>, we were able to identify the tops and their respective heights. From there to a diameter/height and volume equations there is a small step. </p>
<p><img src='http://quantum.uncronopio.org/wp-content/uploads/2008/01/topoftreesinsmallsection.jpg' alt='Top of trees in small section' /></p>
<p>Now we need to move to ground truthing and thinning strategies.</p>
<p>PS. 2005-08-01. We are processing data from ground truthing and our work is looking even <a href="http://quantum.uncronopio.org/2005/08/01/lidar-ground-truthing/" title="link to Quantum Forest">more promising</a>.</p>
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